Index: firmware/source/sys_main.c
===================================================================
diff -u -r7d24ef2e6a4130b3a049e6106a0371fc6503271f -r228773fa681489a62db5c47807a4794e5761d4f5
--- firmware/source/sys_main.c	(.../sys_main.c)	(revision 7d24ef2e6a4130b3a049e6106a0371fc6503271f)
+++ firmware/source/sys_main.c	(.../sys_main.c)	(revision 228773fa681489a62db5c47807a4794e5761d4f5)
@@ -46,6 +46,7 @@
 /* USER CODE END */
 
 /* Include Files */
+
 #include "sys_common.h"
 
 /* USER CODE BEGIN (1) */
@@ -67,11 +68,22 @@
 #include "ConcentratePumps.h"
 #include "DDCommon.h"
 #include "DialysatePumps.h"
+#include "FlushConcentrate.h"
+#include "FlushFilter.h"
+#include "FlushPermeate.h"
+#include "FPModeFault.h"
+#include "FPModeInitPOST.h"
+#include "FPModeStandby.h"
+#include "FPOperationModes.h"
 #include "FpgaDD.h"
 #include "FPInterface.h"
 #include "Heaters.h"
 #include "Interrupts.h"
 #include "Level.h"
+#include "ModeGenPermeateDefeatured.h"
+#include "ModePreGenPermeateDefeatured.h"
+#include "ModeGenPermeate.h"
+#include "ModePreGenPermeate.h"
 #include "MsgQueues.h"
 #include "OperationModes.h"
 #include "Pressure.h"
@@ -183,6 +195,20 @@
     initTDInterface();
     initFPInterface();
     initUltrafiltration();
+
+    // FP modules
+    // FP Modes
+    initFPOperationModes();
+    initFPInitAndPOSTMode();
+    initFPFaultMode();
+    initFPStandbyMode();
+    initPreGenPermeateDefeaturedMode();
+    initPreGenPMode();
+    initGenPermeateMode();
+    initGenPermeateDefeaturedMode();
+    initFilterFlush();
+    initConcentrateFlush();
+    initPermeateFlush();
 }
 
 /*************************************************************************