Index: firmware/source/sys_main.c
===================================================================
diff -u -r1a5efe97f5f39594b45797fded52cafce92afe80 -rd9c2c8e146f20a2acefb9ac1f6497536fb2c404e
--- firmware/source/sys_main.c	(.../sys_main.c)	(revision 1a5efe97f5f39594b45797fded52cafce92afe80)
+++ firmware/source/sys_main.c	(.../sys_main.c)	(revision d9c2c8e146f20a2acefb9ac1f6497536fb2c404e)
@@ -71,8 +71,10 @@
 #include "DrainPump.h"
 #include "Fans.h"
 #include "FluidLeak.h"
+#include "FlowSensors.h"
 #include "FPGA.h"
 #include "Heaters.h"
+#include "Integrity.h"
 #include "InternalADC.h"
 #include "Interrupts.h"
 #include "LoadCell.h"
@@ -84,11 +86,13 @@
 #include "ROPump.h"
 #include "RTC.h"
 #include "SafetyShutdown.h"
+#include "Switches.h"
 #include "SystemComm.h"
 #include "TaskBG.h"
 #include "TemperatureSensors.h"
 #include "Thermistors.h"
 #include "Timers.h"
+#include "Utilities.h"
 #include "UVReactors.h"
 #include "Valves.h"
 #include "Voltages.h"
@@ -167,6 +171,7 @@
  *************************************************************************/
 static void initSoftware( void )
 {
+    initSemaphores();
     initTimers();
     initSafetyShutdown();
     initCPLD();
@@ -175,6 +180,7 @@
     initInterrupts();
     initFPGA();
     initInternalADC();
+    initFlowSensors();
     initPressures();
     initLoadCell();
     initNVDataMgmt();
@@ -191,12 +197,15 @@
     initUVReactors();
     initAccel();
     initRTC();
+    initSwitches();
     initCommBuffers();
     initMsgQueues();
     initSystemComm();
     initReservoirs();
     initFluidLeak();
     initOperationModes();
+    initIntegrity();
+    initTestConfigs();
 }
 
 /*************************************************************************