Index: firmware/App/Controllers/Switches.c
===================================================================
diff -u -rf6b78d1fe6741043de38707211710ab0e8a08483 -r7499a42cc0f906f9a4a947c82c5b4615217ce7e5
--- firmware/App/Controllers/Switches.c	(.../Switches.c)	(revision f6b78d1fe6741043de38707211710ab0e8a08483)
+++ firmware/App/Controllers/Switches.c	(.../Switches.c)	(revision 7499a42cc0f906f9a4a947c82c5b4615217ce7e5)
@@ -7,15 +7,16 @@
 *
 * @file    Switches.c
 *
-* @author  (last)      Sean Nash
-* @date    (last)      12-Nov-2021
+* @author  (last)      Dara Navaei
+* @date    (last)      13-Jul-2022
 *
 * @author  (original)  Dara Navaei
 * @date    (original)  25-Jul-2021
 *
 ***************************************************************************/
 
 #include "FPGA.h"
+#include "NVDataMgmt.h"
 #include "Switches.h"
 #include "SystemCommMessages.h"
 #include "TaskGeneral.h"
@@ -30,8 +31,11 @@
 
 #define SWITCHES_DATA_PUB_INTERVAL       ( MS_PER_SECOND / TASK_GENERAL_INTERVAL )              ///< Interval (ms/task time) at which the switches data is published on the CAN bus.
 #define SWITCHES_DEBOUNCE_TIME_MS        ( MS_PER_SECOND / 4 )                                  ///< Switches FPGA status check interval.
-#define DATA_PUBLISH_COUNTER_START_COUNT 4                                                      ///< Data publish counter start count.
+#define DATA_PUBLISH_COUNTER_START_COUNT 90                                                     ///< Data publish counter start count.
 
+#define FRONT_DOOR_SWITCH_MASK           0x0010                                                 ///< Front door switch bit mask. Bit 4 of the FPGA GPIO register.
+#define PUMP_TRACK_SWITCH_MASK           0x0020                                                 ///< Pump track switch bit mask. Bit 5 of the FPGA GPIO register.
+
 /// Switch status structure
 typedef struct
 {
@@ -93,16 +97,20 @@
         switch ( i )
         {
             case FRONT_DOOR:
-                currentSwitchStatus = ( 0 == getFPGAFrontDoorStatus() ? STATE_OPEN : STATE_CLOSED );
+                currentSwitchStatus = ( FRONT_DOOR_SWITCH_MASK == getFPGAFrontDoorStatus() ? STATE_OPEN : STATE_CLOSED );
                 break;
 
             case PUMP_TRACK_SWITCH:
-                currentSwitchStatus = ( 0 == getFPGAPumpTrackSwitchStatus() ? STATE_OPEN : STATE_CLOSED );
+                currentSwitchStatus = ( PUMP_TRACK_SWITCH_MASK == getFPGAPumpTrackSwitchStatus() ? STATE_OPEN : STATE_CLOSED );
                 break;
 
+#ifndef _VECTORCAST_
+            // Since this is a for loop the default cannot be reached in VectorCAST for 100% coverage
+
             default:
                 SET_ALARM_WITH_2_U32_DATA( ALARM_ID_HD_SOFTWARE_FAULT, SW_FAULT_ID_HD_INVALID_SWITCH_ID, i )
                 break;
+#endif
         }
 
         // Check if the current switch status is not the same as the recorded data
@@ -116,9 +124,18 @@
             // If the debounce time has been elapsed, update the switch status to the new status
             else if ( TRUE == didTimeout( switchesStatus[ i ].debounceStartTime, SWITCHES_DEBOUNCE_TIME_MS ) )
             {
-                switchesStatus[ i ].debounceStartTime = 0;
+                if ( FRONT_DOOR == i )
+                {
+                    // Log front door switch change
+                    sendTreatmentLogEventData( FRONT_DOOR_SWITCH_CHANGED_EVENT, (F32)switchesStatus[ i ].status.data, (F32)currentSwitchStatus );
+                }
+                else if ( PUMP_TRACK_SWITCH == i )
+                {
+                    // Log pump track switch change
+                    sendTreatmentLogEventData( PUMP_TRACK_SWITCH_CHANGED_EVENT, (F32)switchesStatus[ i ].status.data, (F32)currentSwitchStatus );
+                }
                 // If the bit is 0, the door switch is open, because it is normally open switch
-                // TODO investigate the polarity of the pump track switch once it tied to the cartridge latch
+                switchesStatus[ i ].debounceStartTime = 0;
                 switchesStatus[ i ].status.data       = currentSwitchStatus;
             }
         }
@@ -128,6 +145,22 @@
         }
     }
 
+#ifndef _RELEASE_
+    if ( getSoftwareConfigStatus( SW_CONFIG_DISABLE_SWITCHES_MONITOR ) != SW_CONFIG_ENABLE_VALUE )
+#endif
+    {
+        // Clear active Alarms
+        if ( STATE_CLOSED == getSwitchStatus( FRONT_DOOR ) )
+        {
+            clearAlarmCondition( ALARM_ID_CARTRIDGE_DOOR_OPENED );
+        }
+
+        if ( STATE_CLOSED == getSwitchStatus( PUMP_TRACK_SWITCH ) )
+        {
+            clearAlarmCondition( ALARM_ID_PUMP_TRACK_LATCH_OPENED );
+        }
+    }
+
     publishSwitchesData();
 }
 
@@ -176,7 +209,7 @@
     {
         SWITCHES_DATA_T data;
 
-        data.frontDoor      = (U32)getSwitchStatus( FRONT_DOOR );
+        data.frontDoor       = (U32)getSwitchStatus( FRONT_DOOR );
         data.pumpTrackSwitch = (U32)getSwitchStatus( PUMP_TRACK_SWITCH );
 
         switchesDataPublicationCounter = 0;