Index: FPGA.c
===================================================================
diff -u -rca1d590217b1bfd14f0e0682f88e04de076ff199 -re59d65934d65e5a693b06496daa1523806af9495
--- FPGA.c	(.../FPGA.c)	(revision ca1d590217b1bfd14f0e0682f88e04de076ff199)
+++ FPGA.c	(.../FPGA.c)	(revision e59d65934d65e5a693b06496daa1523806af9495)
@@ -165,6 +165,9 @@
  *************************************************************************/
 void initFPGA( U08* hdr, U08* sen, U08* act, U32 hdrSize, U32 senSize, U32 actSize )
 {
+    // Initialize fpga state
+    fpgaState = FPGA_STATE_START;
+
     // Initialize fpga data structure pointers
     fpgaHeaderPtr             = hdr;
     fpgaSensorReadingsPtr     = sen;
@@ -264,6 +267,9 @@
     fpgaDMAReadRespControlRecord.FRDOFFSET = 0;                  // Not used
     fpgaDMAReadRespControlRecord.FRSOFFSET = 0;                  // Not used
 
+    // Reset comm flags
+    resetFPGACommFlags();
+
     // There should not be any data pending yet
     consumeUnexpectedData();
 }