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DEN-4308 initial commit of the branch

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DEN-4212: Tuned blood and dialysate flow sensors. Changed blood and dialysate pump control back to closed loop. Updated FPGA ID.

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DEN-4212, DEN-4217: Added accelerometer feature. Added calibration to blood and dialysate flow. Moved msg payload structures to a separate header file.

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Handle CAN and UART error/warning notifications. Differentiated HD from DG s/w fault. Updated some older module/function headers to latest format.

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Added f/w debug message support. Added debug messages for CAN/UART error interrupts and alarm trigger/clear events. Added FPGA version info to version message. Added handler for DG/UI alarm trigger/clear events. Added debug test code for task/interrupt timing.

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Bamboo Commit: Updated the Copyright with the current year and replaced tabs with 4 spaces

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Addressed code review feedback. Updated FPGA actuators record per HDD.

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Updated FPGA register map to latest HDD. Separated ramp up and ramp down rates so they can be set differently for blood and dialysate pumps.

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Added line pressure conversions. Added backup alarm audio pin control and set it off on power up.

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Increased target fill volume. Addressed code review feedback.

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Added test code that can read slow page of FPGA. Added test code for flow signal strength and occlusion sensor debug output for h/w testing. Delayed reservoir switch until after DG has flushed lines and started recirculating in order to get a more stable reading on load cells.

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Added rotor speed to dialysate pumps. Updated doxygen commenting. Added CPP check settings for the HD firmware project.

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Added interrupt handler for rotor hall sensor edges. Handled BP rotor hall sensor edges.

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UT/IT updates.

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Further implementation of UF settings change messaging and handling. Code review fixes.

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Added DPo implementation. Added some messagine for DPo. Added FIRFilters. Updated HALCoGen pinouts.

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Added new PresOccl, Dialysis, and TreatmentStop modules. Updated test scripts for system communication modules.

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Tuned pump control. Fixed PIController anti-windup. Added some temporary debug code. Added feature to CAN for messages that require an ACK.

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Merge branch 'master' into DEN-1312-hd-dialysate-inlet-pump-drive-flow-sensor-control

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Addressed code review feedback. +review HD-DEN-1312-1

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Updated the Copyright with the current year and replaced tabs with 4 spaces

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Updated FPGA registers. Removed some CAN debug code. Removed html reports from vectorcast.

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Fixed white space between brackets throughout. Added some debug code to help troubleshoot comm issue. Updated power off messaging. +review HD-DEN-759-1

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Started new UT for BloodFlow module. Finished UT for AlarmMgmt module. Fixed issues discovered during UT. +review HD-DEN-759-1

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Addressed code review feedback. Fixed an intermittent CAN bug. Updated UT for Buttons, CPLD, and Interrupts modules. +review HD-DEN-759-1

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Initial commit of the Real Time Clock code

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Added blood pump control per flow. Added timeout to power off request. Added more interrupt handling. Added parity checking for CAN RAM. +review HD-DEN_759-1

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Added dialin override support for alarm status publication interval. Added publishing of alarm status every 500ms. Updated UT for SystemComm and SystemCommMessages modules. Started UT for AlarmMgmt module. Addressed code review feedback. +review HD-DEN-759-1

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Misc fixes to BloodFlow and AlarmMgmt modules. Scaled BloodFlow analogs. Changed cargo to payload throughout code. Updates to existing UT. +review HD-DEN-759-1

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Added messaging for AlarmMgmt and Bloodflow modules. +review HD-DEN-759-1

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